2009 Qubit® Literature Citations

Acar E et al. (2009) Optimization and validation studies of the Mentype® Argus X-8 kit for paternity cases. Forensic Sci Int: Genet Suppl doi:10.1016/j.fsigss.2009.08.189

Bajrami B et al. (2009) Shifting unoccupied spectral space in mass spectrum of peptide fragment ions. J Am Soc Mass Spectrom 20:2124–2134.

Bakos J et al. (2009) Enriched environment influences hormonal status and hippocampal brain derived neurotrophic factor in a sex dependent manner. Neurosci 164:788–797.

Beveridge NJ et al. (2009) Down-regulation of miR-17 family expression in response to retinoic acid induced neuronal differentiation. Cell Signal 21:1837–1845.

Caipang CMA et al. (2009) Detection of Francisella piscicida in Atlantic cod (Gadus morphua L) by the loop-mediated isothermal amplification (LAMP) reaction. Veterinary J doi:10.1016/j.tvjl.2009.03.027.

Campbell C et al. (2009) The effects of heat and oxidative stress on immunocompetence in cnidarians. MarSci: The Undergraduate Journal for Marine and Aquatic Sciences, Spring 2009.

Das B et al. (2009) Expression of Muc19/Smga gene products during murine sublingual gland development: cytodifferentiation and maturation of salivary mucous cells. J Histochem 57:383–396.

Dong L et al. (2009) Humic acids buffer the effects of urea on soil ammonia oxidizers and potential nitrification. Soil Biol Biochem 41:1612–1621.

Florea S et al. (2009) Elimination of marker genes from transformed filamentous fungi by unselected transient transfection with a Cre-expressing plasmid. Fungal Genet Biol 46:721–730.

Gosselin R-D et al. (2009) Region specific decrease in glial fibrillary acidic protein immunoreactivity in the brain of a rat model of depression. Neurosci 159:915–925.

Guedes S et al. (2009) Mass spectrometry characterization of the glycation sites of bovine insulin by tandem mass spectrometry. J Amer Soc Mass Spectrom 20:1319–1326.

Halaihel N et al. (2009) A new real time PCR-based assay for diagnosing Renibacterium salmoninarum in rainbow trout (Oncorhynchus mykiss) and comparison with other techniques. J Microbiol Meth 76:75–80.

Hamza IA et al. (2009) Detection and quantification of human bocavirus in river water. J Gen Virol 90:2634–2637.

Hamza IA et al. (2009) Detection of human viruses in rivers of a densely-populated area in Germany using a virus adsorption elution method optimized for PCR analyses. Water Res 43:2657–2668.

Im G-I, Quan Z (2009) The effects of wnt inhibitors on the chondrogenesis of human mesenhcymal stem cells. Tissue Eng Part A (epub ahead of print).

Lan C-C et al. (2009) Quantitative real-time RT-PCR (qRT-PCR) of zebrafish transcripts: optimization of RNA extraction, quality control considerations and data analysis. Cold Spring Harb Protoc doi:10.1101/pub.prot5314.

Lanes CFC et al. (2009) Evaluation of DNase activity in seminal plasma and uptake of exogenous DNA by spermatozoa of the Brazilian flounder Paralichthys orbignyanus. Theriogenology 71:525–533.

Magalhaes J et al. (2009) Genetic transformation of Citrus sinensis cv. Hamlin with hrpN gene from Erwinia amylovora and evaluation of the transgenic lines for resistance to citrus canker. Scientia Horticulturae 122:109–115.

Mallin MA, Spivey MIH (2009) Assessing fecal bacteria sources in the Wrightsville Beach Area, 2007–2008: report to the town of Wrightsville Beach.

Nelson KA et al. (2009) Archaeal diversity and the prevalence of Crenarchaeota in soil marsh sediments. Appl Env Microbiol 75:4211–4215.

Nogueira P et al. (2009) Transcript profiling and DNA damage in the European eel (Anguilla anguilla L.) exposed to 7,12-dimethylbenz[a]anthracene. Aquatic Toxicol 94:123–130.

Parente RCM et al. (2009) Genetic analysis of the cause of endometrial osseous metaplasia. Obstet Gynecol 114:1103–1108.

Romanish MT et al. (2009) A novel protein isoform of the multicopy human NAIP gene derives from intragenic Alu promoters. PLoS ONE 4:e5761.

Skrastina D et al. (2009) High immunogenicity of a hydrophilic component of the hepatitis B virus preA1 sequence exposed on the surface of three virus-like particle carriers. Vaccine 26:1972–1981.

Stein RJ et al. (2009) Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2). Plant Sci 177:563–569.

Toubarro D et al. (2009) An apoptosis-inducing serine protease secreted by the entomopathogenic nematode Steinernema carpocapsae. Int J Parasitology 39:1319–1330.

Villareal NM et al. (2009) Influence of plant growth regulators on polygalacturonase expression in strawberry fruit. Plant Sci 176:749–757.

Wartman CA et al. (2009) Androgenic effects of a Canadian bleached kraft pulp and paper effluent as assessed using threespine stickleback (Gasterostetus aculeatus). Aquatic Toxicol 92:131–139.

Xu W, Fisal M (2009) Development of a cDNA microarray of zebra mussel (Dreissena polymorpha) foot and its uses in understanding the early stage of underwater adhesion. Gene 436: 71–80.

Xu W, Fisal M (2009) Identification of the molecules involved in zebra mussel (Dreissana polymorpha) hemocytes host defense. Comp Biochem Physiol: Biochem Molec Biol 154:143–149.

Zhang DX et al. (2009) Coregulated expression of loline alkaloid-biosynthesis genes in Neotyphodium uncinatum cultures. Fungal Genet Biol 46:517–530.

2008 Qubit® Literature Citations

Boukouvala G et al. (2008) Post weaning high fat feeding affects rats’ behavior and hypothalamic pituitary adrenal axis at the onset of puberty in a sexually dimorphic manner. Neurosci 153:373–382.

Cavalieri V et al. (2008) cis-Regulatory sequences driving the expression of the Hbox12 homeobox-containing gene in the presumptive aboral ectoderm territory of the Paracentrotus lividus sea urchin embryo. Dev Biol 321:455–469.

Chagas CC et al. (2008) Killer cells immunoglobulin-like receptor gene diversity in a Southern Brazilian population from the state of Parana. Human Immunol 69:872–876.

Dahl JA et al. (2008) Fast genomic μChIP-chip from 1,000 cells. Genome Biol 10:R13. Etxebeste O et al. (2008) Basic-zipper-type transcription factor FlbB controls asexual development in Aspergillus nidulans. Eukaryot Cell 7:38–48.

Hahn Y-S et al. (2008) Vy1+ yδ T cells reduce IL-10-producing CD4+CD25+ T cells in the lung of ovalbumin-sensitized and challenged mice. Immunol Lett 121:87–92.

Hogan NS et al. (2008) Simultaneous determination of androgenic and estrogenic endpoints in the threespine stickleback (Gasterostetus aculeatus) using quantitative RT-PCR. Aquatic Toxicol 90:269–276.

Jankov RP et al. (2008) Contribution of xanthine oxidase-derived superoxide to chronic hypoxic pulmonary hypertension in neonatal rats. Am J Physiol Lung Cell Mol Physiol 294: L233–L245.

Jara C et al. (2008) Analysis of several methods for the extraction of high quality DNA from acetic acid bacteria in wine and vinegar for characterization by PCRbased methods. Int J Food Microbiol 128:336–341.

Melgar JC et al. (2008) Can elevated CO2 improve salt tolerance in olive trees? J Plant Physiol 165:631–640.

Park KHJ, Vincent I (2008) Presymptomatic biochemical changes in hindlimb muscle of G93A human Cu/Zn superoxide dismutase 1 transgenic mouse model of amyotrophic lateral sclerosis. Biochim Biophys Acta Mol Basis Disease 1782:462–468.

Stenzel W et al. (2008) Both TLR2 and TLR4 are required for the effective immune response in Staphylococcus aureus–induced experimental murine brain abscess. Am J Pathol 172:132–145.

Kun E et al. (2008) Identification of poly(ADP-ribose) polymerase-1 as the OXPHOSgenerated ATP sensor of nuclei of animal cells. Biochem Biophys Research Comm 366:568–573.

Yao S-Y et al. (2008) Bacterial cell wall products increases stabilization of HIF-1 alpha in an oligodendrocyte cell line preconditioned by cobalt chloride or desferrioxamine. J Neuroimmunol 200:17–26.

Yi CX et al. (2008) Quantitative real-time PCR assay to detect transgene copy number in cotton (Gossypium hirsutum). Anal Biochem 375:150–152.

2007 Qubit® Literature Citations

Agulleiro MJ et al. (2007) High transcript level of fatty acid-binding protein 11 but not of very low-density lipoprotein receptor is correlated to ovarian follicle atresia in a teleost fish (Solea senegalensis). Biol Reprod 77: 504–516.

Ahnert N et al. (2007) A fast, easy, accurate method for protein quantitation. J Biomol Tech 18:51.

Arvanitis DA et al. (2007) Histidine-rich Ca-binding protein interacts with sarcoplasmic reticulum Ca-ATPase. Am J Physiol Heart Circ Physiol 293:H1581–H1589.

Beaudet MP et al. (2007) Three selective and sensitive fluorogenic dyes for quantification of DNA and RNA. FASEB J 21:A262–A263.

Caffrey SM et al. (2007) Function of periplasmic hydrogenases in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. J Bacteriol 189:6159–6167.

Helanto M et al. (2007) Metabolic engineering of Lactobacillus plantarum for production of L-ribulose. Appl Envir Microbiol 73:7083–7091.

Hewitt J et al. (2007) Gastroenteritis outbreak caused by waterborne Norovirus at a New Zealand ski resort. Appl Envir Microbiol 73:7853–7857.

Mertz PM et al. (2007) Staphylococcus aureus virulence factors associated with infected skin lesions: Influence on the local immune response. Arch Dermatol 143:1259–1263.

Passalacqua KD et al. (2007) The global transcriptional responses of Bacillus anthracis Sterne (34F2) and a sodA1 mutant to paraquat reveal metal ion homeostasis imbalances during endogenous superoxide stress. J Bacteriol 189:3996–4013.

Smart DR et al. (2007) The role of microbial community function in spatial and temporal variation of nitrogen trace gas emissions from California perennial cropping systems. In Kearney Foundation of Soil Science: Understanding and Managing Soil-Ecosystem Functions Across Spatial and Temporal Scales, Progress Report: 2006000.

Su P et al. (2007) Expression and regulation of the β-subunit of ovine folliclestimulating hormone relies heavily on a promoter sequence likely to bind SMADassociated proteins. Endocrinol 148:4500–4508.

Wolf S et al. (2007) Sensitive multiplex real-time reverse transcription-PCR assay for the detection of human and animal Noroviruses in clinical and environmental samples. Appl Envir Microbiol 73:5464–5470.

Zamò A et al. (2007) Microfluidic deletion/insertion analysis for rapid screening of KIT and PDGFRA mutations in CD117-positive gastrointestinal stromal tumors: Diagnostic applications and report of a new KIT mutation. J Mol Diagnostics 9:151–157.

2006 Qubit® Literature Citations

Hristova K, Six J (2006) Linking N cycling to microbial community function within soil microenvironments in cover crop systems. In Kearney Foundation of Soil Science: Soil Carbon and California’s Terrestrial Ecosystems, Final Report: 2005207.