Cell Culture Troubleshooting Guide
There are several common problems encountered when culturing cells. Problems in primary cultures may have different causes than the same problem in established cell lines.
The table below addresses some of the common problems encountered when culturing cells, along with their possible causes and suggested solutions.
|Problem||Possible Cause||Suggested Solution|
|Rapid pH shift in medium||Incorrect carbon dioxide (CO2) tension||Increase or decrease percentage of CO2 in the incubator based on concentration of sodium bicarbonate in medium.
For sodium bicarbonate concentrations of 2.0 to 3.7 g/L, use CO2 amounts of 5% to 10%, respectively. Switch to CO2-Independent Medium.
|Overly tight caps on tissue culture flasks||Loosen caps one-quarter turn.|
||Insufficient bicarbonate buffering||Add HEPES buffer to a final concentration of 10 to 25 mM.|
|Incorrect salts in medium||Use an Earle’s salts-based medium in a CO2 environment and a Hanks’ salts-based medium in atmospheric conditions.|
|Bacterial, yeast, or fungal contamination||Discard culture and medium.
Try to decontaminate culture. (See Decontaminating Cultures with Antibiotics and Antimycotics.)
|Precipitate in medium, no change in pH||Residual phosphate left over from detergent washing, which may precipitate powdered medium components||Rinse glassware in deionized, distilled water several times, then sterilize.
|Frozen medium||Warm medium to 37°C and swirl to dissolve. If precipitate remains, discard medium.|
|Precipitate in medium, change in pH
||Bacterial or fungal contamination
Try to decontaminate culture. (See Decontaminating Cultures with
Antibiotics and Antimycotics.)
|Cells not adhering to culture vessel
||Overly trypsinized cells||Trypsinize for a shorter time, or use less trypsin. (See Dissociation of Cells from
|Mycoplasma contamination||Segregate culture and test for mycoplasma infection. Clean hood and incubator. If culture is contaminated, discard.|
|No attachment factors in medium||For serum-free formulations, be sure they contain attachment factors.|
|Decreased growth of culture
||Change in medium or serum
||Compare media formulations for differences in glucose, amino acids, and other components.
Compare the old lot of serum with the new lot in a growth experiment.
Increase initial cell inoculum.
Adapt cells sequentially to new medium.